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Updated by Yves Mulkers on Apr 25, 2015
Headline for 7wData: Open datasets
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7wData: Open datasets

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US Government Web Services and XML Data Sources

publicly available web services andXML data sources that are provided by the US government. USGovXML indexes data sourcesfrom all 3 branches of government as well as its boards, commissions, corporations and independentagencies. USGovXML documents, in one place and in a uniform manner, the web servicesand XML data sources that are provided by the US government. It includes detailinformation about the data source (i.e. name, description, links to documentation,tech support, etc.) as well as source code snippets (written in C#) to help developersbetter understand how the data sources can be used. When snippets are presented,the projects in which those snippets were extracted can be downloaded as zip files.If an example is available, the Example link on thepage describing the data source will be highlighted. 

7wData

GreenPhyl v4

GreenPhylDB is a web resource designed for comparative and functional genomics in plants. The database contains a catalogue of gene families based on gene predictions of genomes, covering a broad taxonomy of green plants. Result of our automatic clustering is manually annotated and analyzed by a phylogenetic-based approach to predict homologous relationships.

7wData

Genomic tRNA Database

Inevitably with automated sequence analysis, we find exceptions to general identification rules, isoacceptor type predictions ( esp. due to variable post-transcriptional anticodon modification), and questionable tRNA identifications (due to pseudogenes, SINES, or other tRNA-derived elements). We attempt to document all cases we come across, and welcome feedback (lowe @soe.ucsc.edu) on new or unrecognized discrepancies.

7wData

GPXdb Database

Grimes GR, Moodie S, Beattie JS, Craigon M, Dickinson P, Forster T, Livingston AD, Mewissen M, Robertson KA, Ross AJ, Sing G and Ghazal P.(2005) GPX-Macrophage Expression Atlas: a database for expression profiles of macrophages challenged with a variety of pro-inflammatory, anti-inflammatory, benign and pathogen insults. BMC Genomics. Dec 12;6:178.

7wData

greengenes.lbl.gov - Aligned 16S rDNA data and tools

The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. The data and tools presented by greengenes can assist the researcher in choosing phylogenetically specific probes, interpreting microarray results, and aligning/annotating novel sequences.&nbsp If you are an ARB user, you can use greengenes to keep your own local database current.
7wData

annotation database

The development of this database was supported by a grant from the Ministry of Agriculture, Forestry and Fisheries of Japan (Rice Genome Project SY-1102).
7wData

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eSLDB

eSLDB

eSLDB is a database of protein subcellular localization annotation for eukaryotic organisms. It contains experimental annotations derived from primary protein databases, homology based annotations and computational predictions.
7wData

GOLD.db

Genomics of lipid-associated disorders database.
Abstract Background The excessive consumption of high calorie, high fat diets and the adoption of a sedentary life style have made obesity and atherosclerosis major health problems in Western societies. In the USA, over 50% of the population are over-weight (BMI > 25) and close to 25% are considered obese (BMI > 30) [ 1, 2].
7wData

THE KIDNEY DEVELOPMENT DATABASE

The Kidney Development Database was created to collect in one place the data from a large number of developmental studies that have a bearing on the study of kidney development. With its oldest parts dating back to 1993/4, it is, as far as we know, the earliest computer database in the field of vertebrate organogenesis. It is updated frequently, often in response to its users' suggestions (for which we are always grateful).
7wData

HbVar Menu

This is a relational database of information about hemoglobin variants and mutations that cause thalassemia. The initial data came from Syllabi authored by Prof. Titus H.J. Huisman, Mrs. Marianne F.H. Carver, Dr. Erol Baysal, and Prof. Georgi D. Efremov.
7wData

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GOBASE

GOBASE

The organelle genome database GOBASE contains information on mitochondrion (mitochondrial) and chloroplast genomes and related bacteria
7wData

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TopoSNP

TopoSNP

This site produces an interactive visualization of disease and non-disease associated non-synonymous single nucleotide polymorphisms (nsSNPs) and displays geometric and relative entropy calculations.
7wData

dbERGEII

Database of Experimental Results on Gene Expression.
dbERGE II stores experiment and result details for various types of experiments. The current types of experiments available are:
- DNA transfer experiments (Transfections and Transgenic mice)
- Binding assays (Gel shift, In-vivo footprint, In-vitro footprint and Methylation interference)
- Hypersensitive sites
- ChIP - on - chip experiments
7wData

European Union Open Data Portal

The EU Open Data Portal provides, via a metadata catalogue, a single point of access to data of the EU institutions, agencies and bodies for anyone to reuse.
7wData

Opendata - Portail Bruxelles Mobilité

Toute l'information sur les modes de déplacement, les chantiers en cours, l'état du trafic en temps réel et les projets de réaménagement en Région Bruxelloise
7wData

OpenData Bruxelles

As part of its Open Data initiative, the City of Brussels makes its datasets available to everyone. This gives you access to hundreds of data on culture, tourism, mobility, municipal facilities,...

City-Data.com - Stats about all US cities - real estate, relocation info, crime, house prices, cost of living, races,...

Stats about all US cities - real estate, relocation info, crime, house prices, schools, races, income, photos, sex offenders, maps, education, weather, home value estimator, recent sales, etc.
7wData

Website at Census.gov

leading source of quality data about the nation's people and economy for the United States of America
7wData

Eurostat

leading provider of high quality statistics on Europe
7wData

Avaleht - Eesti Statistika

Statistics Estonia (abbreviation SE) is a government agency at the area of administration of the Ministry of Finance. The main task of Statistics Estonia is to provide the public institutions, business and research spheres, international organisations and individuals with reliable and objective information service on economic, demographic, social and environmental situation and trends in Estonia. Official statistics is in compliance with international classifications and methods. Official statistics is in accordance with the principles of impartiality, reliability, relevancy, profitability, confidentiality and transparency. In producing statistics, Statistics Estonia is guided by the Official Statistics Act. The values that the work of the office is based on are reliability, openness and co-operation.
7wData

Australian Bureau of Statistics

Assists and encourages informed decision making, research
and discussion within governments and the community, by leading a
high quality, objective and responsive national statistical service
7wData

Website at Data.gov

The home of the U.S. Government's open data Here you will find data, tools, and resources to conduct research, develop web and mobile applications, design data visualizations, and more.

United States Census Bureau

Access data through products and tools including data visualizations, mobile apps, interactive web apps and other software.